Kvasny Prum. 2014; 60(7-8): 182-190 | DOI: 10.18832/kp2014018

Surface characteristics and taxonomy of brewing yeasts.Peer-reviewed article

Jana KOPECKÁ, Dagmar MATOULKOVÁ, Miroslav NĚMEC
1 Ústav experimentální biologie, Přírodovědecká fakulta, Masarykova Univerzita, Kotlářská 2, 611 37 Brno
2 Výzkumný ústav pivovarský a sladařský, a. s., Lípová 15, 120 44 Praha 2

This study deals with the taxonomy of brewing yeasts, methods of their classification and identification. The hybrid character of brewing yeasts is highlighted, along with related problems in their classification. Molecular biology methods mostly used for the classification of brewing yeasts focus on the differences in chromosomal and mitochondrial DNA, i.e. genotyping. Polyphasic taxonomy of yeasts is based on a combination of genotypic, phenotypic and chemotaxonomic methods. An important feature of brewing yeasts is their cell surface characteristics, which could strongly affect yeast flocculation. The terms "flocculation" and "hydrophobicity" are elucidated, factors affecting flocculation are described and methods of the polyphasic approach in brewing yeast taxonomy are summarized.This study deals with the taxonomy of brewing yeasts, methods of their classification and identification. The hybrid character of brewing yeasts is highlighted, along with related problems in their classification. Molecular biology methods mostly used for the classification of brewing yeasts focus on the differences in chromosomal and mitochondrial DNA, i.e. genotyping. Polyphasic taxonomy of yeasts is based on a combination of genotypic, phenotypic and chemotaxonomic methods. An important feature of brewing yeasts is their cell surface characteristics, which could strongly affect yeast flocculation. The terms "flocculation" and "hydrophobicity" are elucidated, factors affecting flocculation are described and methods of the polyphasic approach in brewing yeast taxonomy are summarized.

Keywords: brewing yeasts, flocculation, hydrophobicity, polyphasic taxonomy, Saccharomyces

Received: May 16, 2014; Accepted: June 7, 2014; Published: July 1, 2014 

References

  1. Akiyama-Jibiki, M., Ishbiki, T., Yamashita, H., Eto, M., 1997: A rapid and simple assay to measure flocculation in brewer's yeast. Tech. Q. Master Brew. Asoc. Am., 34: 278-281.
  2. Alcoba-Flórez, J., Arévalo-Morales, M.del P., Pérez-Roth, E., Laich, F., Rivero-Pérez, B., Méndez-Álvarez, S., 2007: Yeast molecular identification and typing. In Communicating Current Research and Educational topics and Trends in applied microbiology. Formatex: 535-546.
  3. Basařová, G., Šavel, J., Basař, P., Lejsek, T., 2010: Pivovarství - Teorie a praxe výroby piva. Vydavatelství VŠCHT Praha, Praha. ISBN 978-80-7080-734-7.
  4. Berger, K.H., Yaffe, M.P., 2000: Mitochondrial DNA inheritance in Saccharomyces cerevisiae. Trends Microbiol., 8: 508-513. Go to original source...
  5. Borneman, A.R., Desany, B.A., Riches, D., Affourtit, J.P., Forgan, A.H., Pretorius, I.S., Egholm, M., Chambers, P.J., 2011: Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae. PLOS Genet. 7: e1001287. Go to original source...
  6. Boulton, Ch., Quain, D., 2001: Brewing yeast & fermentation. Blackwell Science Ltd, Oxford, UK. ISBN 0‑632-05475-1.
  7. Brenner, D.J., Staley, J.T., Krieg, N.R., 2001: Classification of prokaryotic organisms and the concept of bacterial speciation. Garrity GM (ed) Bergey´s manul of systematic bacteriology, vol 1, 2nd edn. Springer, New York. ISBN 978-0-387-21609-6. Go to original source...
  8. Dengis, P.B., Rouxhet, P.G., 1997: Flocculation mechanisms of top and bottom fermenting brewing yeast. J. Inst. Brew., 103: 257-261. Go to original source...
  9. Dunn, B., Sherlock, G., 2008: Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. Genome Res., 18: 1610-1623. Go to original source...
  10. Fernández-Espinar, M.T., Barrio, E., Querol, A., 2003: Analysis of the genetic variability in the species of the Saccharomyces sensu stricto complex. Yeast. 20: 1213-1226. Go to original source...
  11. Foury, F., Roganti, T., Lecrenier, N., Purnelle, B., 1998: The complete sequence of the mitochondrial genome of Saccharomyces. FEBS Lett., 440: 325-331. Go to original source...
  12. Giudici, P., Pulvirenti, A., 2002: Molecular methods for identification of wine yeasts in Biodiversity and Biotechnology of wine yeasts. Research Signpost, Kerala, India. ISBN 81-7736-120-1.
  13. Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J.D., Jacq, C., Johnston, M., Louis, E.J., Mewes, H.W., Murakami, Y., Philippsen, P., Tettelin, H., Oliver, S.G., 1996: Life with 6000 genes. Science., 274: 546-567. Go to original source...
  14. González, S.S., Barrio, E., Querol, A., 2008: Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. kudriavzevii in brewing. Appl. Environ. Microbiol., 74: 2314-2320. Go to original source...
  15. Groth, C., Petersen, R.F., Piškur, J., 2000: Diversity in organization and the origin of gene orders in the mitochondrial DNA molecules of the genus Saccharomyces. Mol. Biol. Evol., 17: 1833-1841. Go to original source...
  16. Guillamón, J.M., Barrio, E., Huerta, T., Querol, A., 1994: Rapid characterization of four species of the Saccharomyces sensu stricto complex according to mitochondrial DNA patterns. Int. J. Syst. Bacteriol., 44: 708-714. Go to original source...
  17. Ivey, M.L., Phister, T.G., 2011: Detection and identification of microorganisms in wine: a review of molecular techniques. J. Ind. Microbiol. Biotechnol., 38: 1619-1634. Go to original source...
  18. James, S.A., Collins, M.D., Roberts, I.N., 1996: Use of an rRNA internal transcribed spacer region to distinguish phylogenetically closely related species of the genera Zygosaccharomyces and Torulaspora. J. Syst. Bacteriol., 46: 189-194. Go to original source...
  19. James, S.A., O'Kelly, M.J.T., Carter, D.M., Davey, R.P., van Oudenaarden, A., Roberts, I.N., 2009: Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing. Genome Res., 19: 626-635. Go to original source...
  20. Jin, Y.L., Speers, R.A., 1998: Flocculation of Saccharomyces cerevisiae. Food Res. Int., 31: 421‑440. Go to original source...
  21. Kämpfer, P., 2012: Systematic of prokaryotes: the state of the art. Antonie Leewen., 101: 3-11. Go to original source...
  22. Kocková-Kratochvílová, A., 1982: Kvasinky a kvasinkovité mikroorganismy. Alfa, Bratislava. ISBN 63-154-82.
  23. Kurtzman, C.P., 2006: Yeast species recognition from gene sequence analyses and other molecular methods. Mycoscience, 47: 65-71. Go to original source...
  24. Kurtzman, C.P., Fell, J.W., Boekhout, T., 2011: The Yeast, a taxonomic study, Elsevier, Burlington, USA. ISBN 978-0-444-52149-1.
  25. Kurtzman, C.P., Robnett, C.J., 2013: Relationships among genera of the (Ascomycota) from multigene phylogenetic analysis of the type species. FEMS Yeast Res., 13: 23-33. Go to original source...
  26. Legras, J.-L., Karst, F., 2003: Optimisation of interdelta analysis for Saccharomyces cerevisiae strain characterisation. FEMS Microbiol. Lett., 221: 249-255. Go to original source...
  27. Libkind, D., Hittinger, C.T., Valério, E., Goncalves, C., Dover, J., Johnston, M., Goncalves, P., Sampaio, J.P., 2011: Microbe domestication and the identification of the wild genetic stock of lager- -brewing yeast. PNAS, 108: 14539-14544. Go to original source...
  28. Lo, W.S., Dranginis, A.M., 1996: FLO11, a yeast gene related to the STA genes, encodes a novel cell surface flocculin. J. Bacteriol., 178: 7144-7151. Go to original source...
  29. López, V., Fernández-Espinar, M.T., Barrio, E., Ramón, D., Querol, A., 2003: A new PCR-based method for monitoring inoculated wine fermentation. Int. J. Food Microbiol., 81: 63-71. Go to original source...
  30. Lopéz, V., Querol, A., Ramón, D., Fernández-Espinar, M.T., 2001: A simplified procedure to analyse mitochondrial DNA from industrial yeasts. Int. J. Food Microbiol., 68: 75-81. Go to original source...
  31. Matoulková, D., Kopecká, J., Kubizniaková, P., 2013: Mikrobiologie pivovarské výroby - Divoké kvasinky a metody jejich detekce. Kvasny Prum., 59: 246-257. Go to original source...
  32. Matzke, M.A., Scheid, O.M., Matzke, A.J.M., 1999: Rapid structural and epigenetic changes in polyploid and aneuploid genomes. Bioessays, 21: 761-767. Go to original source...
  33. Meadows, R., 2010: Genetic mismatches between nuclei and mitochondria make yeast hybrids sterile. PLOS Biol. 8: e1000433. Go to original source...
  34. Miki, B.L.A., Hung Poon N., James, A.P., Seligy, V.L., 1982: Possible mechanism for flocculation interactions governed by gene FLO1 in Saccharomyces cerevisiae. J. Bacteriol., 150: 878-889. Go to original source...
  35. Muir, A., Harrison, E., Wheals, A., 2011: A multiplex set of species- -specific primers for rapid identification of members of the genus Saccharomyces. FEMS Yeast Res., 11: 552-563. Go to original source...
  36. Muller, L.A.H., McCusker, J.H., 2009: A multispecies-based taxonomic microarray reveals interspecies hybridization and introgression in Saccharomyces cerevisiae. FEMS Yeast Res., 9: 143-152. Go to original source...
  37. Munoz, R., Gómez, A., Robles, V., Rodríguez, P., Cebollero, E., Tabera, L., Carrascosa, V., Gonzalez, R., 2009: Multilocus sequence typing of oenological Saccharomyces cerevisiae strains. Food Microbiol., 26: 841-846. Go to original source...
  38. Nakao, Y., Kanamori, T., Itoh, T., Kodama, Y., Rainieri, S., Nakamura, N., Shimonaga, T., Hattori, M., Ashikari, T., 2009: Genome sequence of lager brewing yeast, an interspecies hybrid. DNA Res., 16: 115-129. Go to original source...
  39. Nardi, T., Carlot, M., De Bortoli, E., Corich, V., Giacomini, A., 2006: A rapid method for differentiation Saccharomyces sensu stricto strains from other yeast species in an enological environment. FEMS Microbiol. Lett., 264: 168-173. Go to original source...
  40. Naumova, E.S., Naumov, G.I., Barrio, E., Querol, A., 2010: Mitochondrial DNA polymorphism of the yeast Saccharomyces bayanus var. uvarum. Microbiol., 79: 520-527. Go to original source...
  41. Nguyen, H.-V., Legras, J.-L., Neuvéglise, C., Gaillardin, C., 2011: Deciphering the hybridisation history leading to the lager lineage based on the mosaic genomes of Saccharomyces bayanus strains NBRC1948 a CBS 380T. PLOS ONE 6: e25821. Go to original source...
  42. Pengelly, R.J., Wheals, A.E., 2013: Rapid identification of Saccharomyces eubayanus and its hybrids. FEMS Yeast Res., 13: 156-161. Go to original source...
  43. Piškur, J., 1994: Inheritance of the yeast mitochondrial genome. Plasmid, 31: 229-241. Go to original source...
  44. Prakash, O., Verma, M., Sharma, P., Kumar, M., Kumari, K., Singh, A., Kumari, H., Jit, S., Gupta, S.K., Khanna, M., Lal, R., 2007: Polyphasic approach of bacterial classification - An overwiev of recent advances. Indian J. Microbiol., 47: 98-108. Go to original source...
  45. Querol, A., Bond, U., 2009: The complex and dinamic genomes of industrial yeasts. FEMS Microbiol. Lett., 293: 1-10. Go to original source...
  46. Rainieri, S., Kodama, Y., Kaneko, Y., Mikata, K., Nakao, Y., Ashikari, T., 2006: Pure and mixed genetic lines of Saccharomyces bayanus and Saccharomyces pastorianus and their contribution to the lager brewing strain genome. Appl. Environ. Microbiol., 72: 3968-3974. Go to original source...
  47. Rainieri, S., Kodama, Y., Nakao, Y., Pulvirenti, A., Giudici, P., 2008: The inheritance of mtDNA in lager brewing strains. FEMS Yeast Res., 8: 586-596. Go to original source...
  48. Scannell, D.R., Zill, O.A., Rokas, A., Payen, C., Dunham, M.J., Eisen, M.B., Rine, J., Johnston, M., Hittinger, C.T., 2011: The awesome power of yeast evolutionary genetics: new genome sequences and strain resources for the Saccharomyces sensu stricto genus. G3 Genes, Genomes, Genetics, 1: 1-25. Go to original source...
  49. Smart, K.A., 2007: Brewing yeast genomes and genome-wide expression and proteome profiling during fermentation. Yeast, 24: 993-1013. Go to original source...
  50. Smukalla, S., Caldara, M., Pochet, N., Beauvais, A., Guadagnini, S., Chen, Y., Vinces, M.D., Jansen, A., Prevost, M.Ch., Latgé, J., Fink, G.R., Foster, K.R., Verstrepen, K.J., 2008: FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast. Cell., 135: 726-737. Go to original source...
  51. Solieri, L., 2010: Mitochondrial inheritance in budding yeasts: towards an integrated understanding. Trends Microbiol., 18: 521- 530. Go to original source...
  52. Solieri, L., Antúez, O., Pérez-Ortín, J.E., Barrio, E., Giudici, P., 2008: Mitochondrial inheritance and fermentative: oxidative balance in hybrids between Saccharomyces cerevisiae and Saccharomyces uvarum. Yeast, 25: 485-500. Go to original source...
  53. Speers, R..A., Durance, T.D., Tung, M.A., Tou, J., 1993: Colloidal properties of flocculent and nonflocculent brewing yeast suspensions. Biotechnol. Prog., 9: 267-272. Go to original source...
  54. Speers, R.A., Smart, K., Steward, R., 2009: Zymolectins in Saccharomyces cerevisiae. J. Inst. Brew., 104: 298.
  55. Stewart, G.G., 2009: The Horace Brown Medal Lecture:Forty years of brewing research. J. Inst. Brew., 115: 3‑29. Go to original source...
  56. Straver, M.H., Kijne, J. W., 1996: A rapid and selective assay for measuring cell surface hydrophobicity of brewer's yeast cells. Yeast, 12: 207-213. Go to original source...
  57. Torriani, S., Zapparoli, G., Malacrino, P., Suzzi, G., Dellaglio, F., 2004: Rapid identification and differentiation of Saccharomyces cerevisiae, Saccharomyces bayanus and their hybrids by multiplex PCR. Lett. Appl. Microbiol., 38: 239-244. Go to original source...
  58. Valente, P., Gouveia, F.C., de Lemos, G.A., Pimentel, D., van Elsas, J.D., Mendonca-Hagler, L.C., Hagler, A.N., 1996: PCR amplification of the rDNA internal transcribed spacer region for differentiation of Saccharomyces cultures. FEMS Microbiol. Lett., 137: 253-256. Go to original source...
  59. Veelders, M., Brückner, S., Ott, D., Unverzagt, C., Mösch, H.U., Essen, L.O., 2010: Structural basis of flocculin-mediated social behavior in yeast. P. Natl. Acad. Sci. USA, 107: 22511-22516. Go to original source...
  60. Verstrepen, K.J., Derdelinckx, G., Verachtert, H., Delvaux, F.R., 2003: Yeast flocculation: What brewers should know. Appl. Microbiol. Biotechnol., 61: 197-205. Go to original source...